acedb.vim (4871B)
1 " Vim syntax file 2 " Language: AceDB model files 3 " Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk) 4 " Last change: Thu Apr 26 10:38:01 BST 2001 5 " URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim 6 7 " Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm 8 " AceDB software is available from http://www.acedb.org 9 10 " quit when a syntax file was already loaded 11 if exists("b:current_syntax") 12 finish 13 endif 14 15 syn keyword acedbXref XREF 16 syn keyword acedbModifier UNIQUE REPEAT 17 18 syn case ignore 19 syn keyword acedbModifier Constraints 20 syn keyword acedbType DateType Int Text Float 21 22 " Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html 23 syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title 24 syn keyword acedbMagic Flipped Centre Extent View Default_view 25 syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes 26 syn keyword acedbMagic Mapping_data More_data Position Ends Left Right 27 syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative 28 syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge 29 syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag 30 syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit 31 syn keyword acedbMagic Locator Magnification Projection_lines_on 32 syn keyword acedbMagic Marker_points Marker_intervals Contigs 33 syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood 34 syn keyword acedbMagic Point_query Point_yellow Point_width 35 syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne 36 syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates 37 syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all 38 syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap 39 syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid 40 syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling 41 syn keyword acedbMagic DNA Structure From Source Source_Exons 42 syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele 43 syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive 44 syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol 45 syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title 46 syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant 47 syn keyword acedbMagic Tested Selected_trans Backcross Back_one 48 syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc 49 syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B 50 syn keyword acedbMagic Score Score_by_offset Score_by_width 51 syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X 52 syn keyword acedbMagic Journal Year Volume Page Author 53 syn keyword acedbMagic Selected One_all Recs_all One_let 54 syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected 55 syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid 56 syn keyword acedbMagic Reversed_physical Points Positive Negative 57 syn keyword acedbMagic Point_error_scale Point_segregate_ordered 58 syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD 59 syn keyword acedbMagic EMBL_feature Homol Feature 60 syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width 61 syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query 62 syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to 63 syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A 64 syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence 65 syn keyword acedbMagic Visible Properties Transposon 66 67 syn match acedbClass "^?\w\+\|^#\w\+" 68 syn match acedbComment "//.*" 69 syn region acedbComment start="/\*" end="\*/" 70 syn match acedbComment "^#\W.*" 71 syn match acedbHelp "^\*\*\w\+$" 72 syn match acedbTag "[^^]?\w\+\|[^^]#\w\+" 73 syn match acedbBlock "//#.\+#$" 74 syn match acedbOption "^_[DVH]\S\+" 75 syn match acedbFlag "\s\+-\h\+" 76 syn match acedbSubclass "^Class" 77 syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden" 78 syn match acedbNumber "\<\d\+\>" 79 syn match acedbNumber "\<\d\+\.\d\+\>" 80 syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>" 81 syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline 82 83 " Rest of syntax highlighting rules start here 84 85 " Define the default highlighting. 86 " Only when an item doesn't have highlighting yet 87 88 hi def link acedbMagic Special 89 hi def link acedbHyb Special 90 hi def link acedbType Type 91 hi def link acedbOption Type 92 hi def link acedbSubclass Type 93 hi def link acedbSubtag Include 94 hi def link acedbFlag Include 95 hi def link acedbTag Include 96 hi def link acedbClass Todo 97 hi def link acedbHelp Todo 98 hi def link acedbXref Identifier 99 hi def link acedbModifier Label 100 hi def link acedbComment Comment 101 hi def link acedbBlock ModeMsg 102 hi def link acedbNumber Number 103 hi def link acedbString String 104 105 106 let b:current_syntax = "acedb" 107 108 " The structure of the model.wrm file is sensitive to mixed tab and space 109 " indentation and assumes tabs are 8 so... 110 se ts=8